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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 450 48

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 261 40

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 192 30

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 170 54

  5. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 117 31

  6. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 32

Repositories

Showing 10 of 186 repositories
  • ng-extend Public
    seung-lab/ng-extend’s past year of commit activity
    Vue 5 8 3 27 Updated Mar 14, 2026
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 170 BSD-3-Clause 54 84 7 Updated Mar 14, 2026
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 24 Apache-2.0 363 91 37 Updated Mar 13, 2026
  • osteoid Public

    Skeleton object used for representing neurons, adjacent cells, and organelles.

    seung-lab/osteoid’s past year of commit activity
    C++ 3 BSD-3-Clause 2 2 1 Updated Mar 13, 2026
  • KVDbClient Public

    generic key-value database client

    seung-lab/KVDbClient’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 13, 2026
  • compressedseg Public Forked from janelia-flyem/compressedseg

    compressed_segmentation for Neuroglancer volumes. This is the PyPI package fork.

    seung-lab/compressedseg’s past year of commit activity
    C++ 4 Apache-2.0 3 2 0 Updated Mar 12, 2026
  • DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    seung-lab/DracoPy’s past year of commit activity
    C++ 117 Apache-2.0 31 10 2 Updated Mar 12, 2026
  • crackle Public

    3D dense segmentation compression codec based on crack codes.

    seung-lab/crackle’s past year of commit activity
    C++ 15 BSD-3-Clause 1 11 1 Updated Mar 12, 2026
  • shard-computer Public

    Perform accelerated shard hash computation on numpy arrays.

    seung-lab/shard-computer’s past year of commit activity
    C++ 4 LGPL-2.1 0 0 0 Updated Mar 12, 2026
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 66 GPL-3.0 23 27 3 Updated Mar 12, 2026

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