This is the public repo for our EMNLP'20 paper: https://arxiv.org/abs/2009.07373.

You should be able to replicate the main results in the paper following the instructions below for TB-Dense data. For I2b2 dataset, due to confidentiality and non-disclosure agreements, we are not able to publish data and data analysis code, but modeling code may be added soon upon data owner's permission.

I included the environment that the code successfully ran on for your reference: environment.yml.

To replicate main results, simply run,

bash code/tbd/main_results.sh

To replicate results in the discussion (ablation study), run,

bash code/tbd/top{k}_results.sh

To conduct grid_search based on development data, run,

bash code/tbd/grid_search.sh